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1

A generalized approach to sampling backbone conformations with RosettaDock for CAPRI rounds 13–19

Aroop Sircar, Sidhartha Chaudhury, Krishna Praneeth Kilambi, Monica Berrondo, Jeffrey J. Gray

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 321 KB

english, 2010

2

Towards Fast and Accurate Calculation of Protein pKa Values Exploiting Various Degrees of Conformational Flexibility

Praneeth Kilambi, Krishna, Gray, Jeffrey J.

Journal:

Biophysical Journal

Année:

2012

Langue:

english

Fichier:

PDF, 73 KB

english, 2012

3

Rapid Calculation of Protein pKa Values Using Rosetta

Kilambi, Krishna Praneeth, Gray, Jeffrey J.

Journal:

Biophysical Journal

Année:

2012

Langue:

english

Fichier:

PDF, 539 KB

english, 2012

4

Incorporating the Effects of pH in Protein-Protein Docking

Kilambi, Krishna Praneeth, Gray, Jeffrey J.

Journal:

Biophysical Journal

Année:

2011

Langue:

english

Fichier:

PDF, 38 KB

english, 2011

5

Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27

Kilambi, Krishna Praneeth, Pacella, Michael S., Xu, Jianqing, Labonte, Jason W., Porter, Justin R., Muthu, Pravin, Drew, Kevin, Kuroda, Daisuke, Schueler-Furman, Ora, Bonneau, Richard, Gray, Jeffrey J

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 377 KB

english, 2013

6

Functional Loss of Semaphorin 3C and/or Semaphorin 3D and Their Epistatic Interaction with Ret Are Critical to Hirschsprung Disease Liability

Jiang, Qian, Arnold, Stacey, Heanue, Tiffany, Kilambi, Krishna Praneeth, Doan, Betty, Kapoor, Ashish, Ling, Albee Yun, Sosa, Maria X., Guy, Moltu, Jiang, Qingguang, Burzynski, Grzegorz, West, Kristen,

Journal:

The American Journal of Human Genetics

Année:

2015

Langue:

english

Fichier:

PDF, 3.21 MB

english, 2015

7

Protein-Protein Docking with Dynamic Residue Protonation States

Kilambi, Krishna Praneeth, Reddy, Kavan, Gray, Jeffrey J., Briggs, James M.

Journal:

PLoS Computational Biology

Année:

2014

Langue:

english

Fichier:

PDF, 1.18 MB

english, 2014

8

STRUCTURAL BASIS OF UNIQUE SELECTIVITY OF ADUCANUMAB FOR OLIGOMERIC FORMS OF AMYLOID-β

Arndt, Joseph W., Quan, Chao, Qian, Fang, Kilambi, Krishna Praneeth, Bussière, Thierry, Weinreb, Paul

Journal:

Alzheimer's & Dementia

Année:

2016

Langue:

english

Fichier:

PDF, 72 KB

english, 2016

9

Structural and kinetic basis for the selectivity of aducanumab for aggregated forms of amyloid-β

Arndt, Joseph W., Qian, Fang, Smith, Benjamin A., Quan, Chao, Kilambi, Krishna Praneeth, Bush, Martin W., Walz, Thomas, Pepinsky, R. Blake, Bussière, Thierry, Hamann, Stefan, Cameron, Thomas O., Weinr

Journal:

Scientific Reports

Année:

2018

Langue:

english

Fichier:

PDF, 5.59 MB

english, 2018

10

Structure-based cross-docking analysis of antibody–antigen interactions

Kilambi, Krishna Praneeth, Gray, Jeffrey J.

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 7.99 MB

english, 2017

11

Targeted DNA Methylation Using an Artificially Bisected M.HhaI Fused to Zinc Fingers

Chaikind, Brian, Kilambi, Krishna Praneeth, Gray, Jeffrey J., Ostermeier, Marc, Isalan, Mark

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 2.02 MB

english, 2012